Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Cpsf3Q9QXK7 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cpsf3Q9QXK7 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Cpsf3Q9QXK7 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cpsf3Q9QXK7 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Gm9103-201ENSMUST00000119371 405 ntBASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Gm36967-201ENSMUST00000193814 266 ntBASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cpsf3Q9QXK7 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC17.62■□□□□ 0.41
Cpsf3Q9QXK7 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Gm18669-201ENSMUST00000216049 778 ntBASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Cpsf3Q9QXK7 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Cpsf3Q9QXK7 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms