Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.97■□□□□ 0.47
Copb1Q9JIF7 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.97■□□□□ 0.47
Copb1Q9JIF7 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Copb1Q9JIF7 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC17.96■□□□□ 0.47
Copb1Q9JIF7 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Gm11539-201ENSMUST00000119837 557 ntBASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Gm7370-201ENSMUST00000219471 767 ntBASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Gm18115-201ENSMUST00000221209 621 ntBASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Zfp264-201ENSMUST00000208656 1563 ntBASIC17.95■□□□□ 0.46
Copb1Q9JIF7 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 AC133083.1-201ENSMUST00000221736 2209 ntBASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Copb1Q9JIF7 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Gm44450-201ENSMUST00000199528 114 ntBASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Copb1Q9JIF7 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 37.5 ms