Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Gm5712-201ENSMUST00000199748 1043 ntBASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Cpsf1Q9EPU4 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Gm2651-201ENSMUST00000203560 838 ntBASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Cpsf1Q9EPU4 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 2810030D12Rik-203ENSMUST00000190461 1039 ntBASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Cpsf1Q9EPU4 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Cpsf1Q9EPU4 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Ak3-201ENSMUST00000025696 2809 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Gm8097-201ENSMUST00000117903 829 ntBASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Gm27525-201ENSMUST00000184465 107 ntBASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Rbfox2-207ENSMUST00000227533 1041 ntBASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Gm5837-201ENSMUST00000191844 1369 ntBASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Cpsf1Q9EPU4 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Cpsf1Q9EPU4 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Gm25990-201ENSMUST00000102440 86 ntBASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Gm12350-201ENSMUST00000121208 462 ntBASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
Cpsf1Q9EPU4 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Gm4535-201ENSMUST00000182274 558 ntBASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Gm6376-201ENSMUST00000209407 580 ntBASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Gm10060-201ENSMUST00000212002 111 ntBASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Gm10355-201ENSMUST00000097146 517 ntBASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC22.48■■□□□ 1.19
Cpsf1Q9EPU4 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms