Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf1Q9EPU0 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf1Q9EPU0 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
Upf1Q9EPU0 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Gm5366-201ENSMUST00000215494 1338 ntBASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Gm16137-201ENSMUST00000161571 664 ntTSL 5 BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Mettl26-203ENSMUST00000163356 534 ntTSL 5 BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Gm37277-201ENSMUST00000194052 1111 ntBASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Upf1Q9EPU0 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Gm15163-201ENSMUST00000120749 1302 ntBASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Upf1Q9EPU0 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Gm5779-201ENSMUST00000218467 910 ntBASIC18.59■□□□□ 0.57
Upf1Q9EPU0 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Upf1Q9EPU0 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
Upf1Q9EPU0 Gm6858-201ENSMUST00000208582 1468 ntBASIC18.58■□□□□ 0.57
Upf1Q9EPU0 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Upf1Q9EPU0 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Upf1Q9EPU0 Gpr160-207ENSMUST00000166278 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Upf1Q9EPU0 Rps19-201ENSMUST00000108428 1284 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Gm44719-201ENSMUST00000206404 149 ntBASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Gm18062-201ENSMUST00000208020 547 ntBASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Gm18055-201ENSMUST00000208254 547 ntBASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Upf1Q9EPU0 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Epo-201ENSMUST00000031723 715 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf1Q9EPU0 AC126250.1-201ENSMUST00000228343 1768 ntBASIC18.57■□□□□ 0.56
Upf1Q9EPU0 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms