Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cdc40Q9DC48 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Gm6623-201ENSMUST00000173570 544 ntBASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Wscd2-201ENSMUST00000094452 4302 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Cdc40Q9DC48 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Haglr-201ENSMUST00000100000 2085 ntBASIC15.23■□□□□ 0.03
Cdc40Q9DC48 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Cdc40Q9DC48 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Ino80e-203ENSMUST00000106343 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Gm11950-201ENSMUST00000121615 838 ntBASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Cdc40Q9DC48 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 AC154855.1-201ENSMUST00000227353 1458 ntBASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Gm17807-201ENSMUST00000186869 298 ntBASIC15.21■□□□□ 0.03
Cdc40Q9DC48 AC159205.3-201ENSMUST00000224614 874 ntBASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Gm45774-201ENSMUST00000211992 2665 ntBASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms