Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Smc1aQ9CU62 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Kank1-201ENSMUST00000049400 5637 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Dhfr-201ENSMUST00000022218 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Gm9013-201ENSMUST00000132939 882 ntBASIC18.34■□□□□ 0.53
Smc1aQ9CU62 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Smc1aQ9CU62 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Smc1aQ9CU62 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.33■□□□□ 0.53
Smc1aQ9CU62 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Smc1aQ9CU62 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Smc1aQ9CU62 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Smc1aQ9CU62 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Smc1aQ9CU62 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Smc1aQ9CU62 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Smc1aQ9CU62 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Gm27704-201ENSMUST00000185094 107 ntBASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Gm37025-201ENSMUST00000195159 829 ntBASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Gm9731-201ENSMUST00000209480 747 ntBASIC18.32■□□□□ 0.52
Smc1aQ9CU62 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Smc1aQ9CU62 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Smc1aQ9CU62 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms