Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Gm14822-201ENSMUST00000122247 291 ntBASIC17.29■□□□□ 0.36
Clp1Q99LI9 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Clp1Q99LI9 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Clp1Q99LI9 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.29■□□□□ 0.36
Clp1Q99LI9 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Clp1Q99LI9 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.28■□□□□ 0.36
Clp1Q99LI9 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.28■□□□□ 0.36
Clp1Q99LI9 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.27■□□□□ 0.36
Clp1Q99LI9 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Gm25911-201ENSMUST00000157621 56 ntBASIC17.27■□□□□ 0.36
Clp1Q99LI9 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Clp1Q99LI9 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clp1Q99LI9 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clp1Q99LI9 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clp1Q99LI9 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clp1Q99LI9 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Clp1Q99LI9 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Clp1Q99LI9 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
Clp1Q99LI9 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clp1Q99LI9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Ndufaf2-202ENSMUST00000223734 556 ntBASIC17.25■□□□□ 0.35
Clp1Q99LI9 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clp1Q99LI9 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clp1Q99LI9 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clp1Q99LI9 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms