Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ushbp1Q8R370 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Gm18115-201ENSMUST00000221209 621 ntBASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ushbp1Q8R370 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ushbp1Q8R370 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ushbp1Q8R370 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC18.37■□□□□ 0.53
Ushbp1Q8R370 Gm11950-201ENSMUST00000121615 838 ntBASIC18.37■□□□□ 0.53
Ushbp1Q8R370 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ushbp1Q8R370 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ushbp1Q8R370 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
Ushbp1Q8R370 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ushbp1Q8R370 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Mir3081-201ENSMUST00000175305 84 ntBASIC18.36■□□□□ 0.53
Ushbp1Q8R370 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ushbp1Q8R370 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ushbp1Q8R370 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.34■□□□□ 0.53
Ushbp1Q8R370 Gm44450-201ENSMUST00000199528 114 ntBASIC18.34■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms