Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Gm12527-201ENSMUST00000117967 564 ntBASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ccdc28aQ8CEI3 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.33■□□□□ 0.37
Ccdc28aQ8CEI3 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ccdc28aQ8CEI3 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ccdc28aQ8CEI3 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Gm26762-201ENSMUST00000180864 5284 ntTSL 5 BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Mapk14-204ENSMUST00000114754 3592 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
Ccdc28aQ8CEI3 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Ccdc28aQ8CEI3 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Ggnbp2-203ENSMUST00000108081 3034 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Ccdc28aQ8CEI3 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms