Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Gm11233-201ENSMUST00000122357 634 ntBASIC17.1■□□□□ 0.33
Trim35Q8C006 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Gm22693-201ENSMUST00000175049 442 ntBASIC17.1■□□□□ 0.33
Trim35Q8C006 Eloc-206ENSMUST00000186948 641 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Trim35Q8C006 Csn2-204ENSMUST00000196869 879 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Trim35Q8C006 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 AC153899.1-201ENSMUST00000214092 1117 ntBASIC17.1■□□□□ 0.33
Trim35Q8C006 Speer6-ps1-203ENSMUST00000223482 979 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 AC154848.1-201ENSMUST00000225451 846 ntBASIC17.1■□□□□ 0.33
Trim35Q8C006 Timm23-208ENSMUST00000226683 750 ntBASIC17.1■□□□□ 0.33
Trim35Q8C006 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trim35Q8C006 Gm5799-201ENSMUST00000169023 1314 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trim35Q8C006 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Trim35Q8C006 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.1■□□□□ 0.33
Trim35Q8C006 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trim35Q8C006 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Prl8a2-202ENSMUST00000110363 922 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Zfp968-203ENSMUST00000131676 1272 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim35Q8C006 AU040972-201ENSMUST00000165610 1042 ntTSL 3 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Prl8a2-201ENSMUST00000018403 939 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 1700041M19Rik-202ENSMUST00000190908 1123 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.09■□□□□ 0.33
Trim35Q8C006 B230112G18Rik-201ENSMUST00000192979 851 ntBASIC17.09■□□□□ 0.33
Trim35Q8C006 Gm42836-201ENSMUST00000197198 728 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim35Q8C006 AC156016.1-201ENSMUST00000227190 1035 ntBASIC17.09■□□□□ 0.33
Trim35Q8C006 Acbd7-202ENSMUST00000228935 534 ntAPPRIS ALT1 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Spink11-201ENSMUST00000097587 746 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Gm10617-201ENSMUST00000098368 1172 ntBASIC17.09■□□□□ 0.33
Trim35Q8C006 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Gm7680-201ENSMUST00000216198 1348 ntBASIC17.09■□□□□ 0.33
Trim35Q8C006 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trim35Q8C006 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.09■□□□□ 0.33
Trim35Q8C006 Mxd4-201ENSMUST00000042701 3872 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim35Q8C006 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim35Q8C006 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trim35Q8C006 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Trim35Q8C006 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Casp8ap2-202ENSMUST00000108178 1189 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Trim35Q8C006 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Trim35Q8C006 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Gm37468-201ENSMUST00000194767 854 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Arhgef4-208ENSMUST00000211073 171 ntBASIC17.08■□□□□ 0.32
Trim35Q8C006 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
Trim35Q8C006 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Trim35Q8C006 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trim35Q8C006 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim35Q8C006 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim35Q8C006 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim35Q8C006 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trim35Q8C006 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trim35Q8C006 Gm14819-201ENSMUST00000101645 928 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim35Q8C006 Gm10486-201ENSMUST00000101647 924 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim35Q8C006 Gm14632-201ENSMUST00000101654 864 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trim35Q8C006 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trim35Q8C006 Mir7071-201ENSMUST00000184847 69 ntBASIC17.07■□□□□ 0.32
Trim35Q8C006 Gm10925-201ENSMUST00000189941 678 ntBASIC17.07■□□□□ 0.32
Trim35Q8C006 Gm44200-201ENSMUST00000204883 662 ntTSL 5 BASIC17.07■□□□□ 0.32
Trim35Q8C006 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Trim35Q8C006 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.07■□□□□ 0.32
Trim35Q8C006 Olfr125-201ENSMUST00000050255 1118 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trim35Q8C006 Gm10147-201ENSMUST00000075388 864 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms