Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim56Q80VI1 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Haglr-201ENSMUST00000100000 2085 ntBASIC19.35■□□□□ 0.69
Trim56Q80VI1 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Trim56Q80VI1 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Trim56Q80VI1 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 AC153794.1-201ENSMUST00000169148 126 ntBASIC19.34■□□□□ 0.69
Trim56Q80VI1 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC19.34■□□□□ 0.69
Trim56Q80VI1 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim56Q80VI1 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim56Q80VI1 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim56Q80VI1 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
Trim56Q80VI1 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim56Q80VI1 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Gm14464-201ENSMUST00000119658 1254 ntBASIC19.33■□□□□ 0.68
Trim56Q80VI1 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Trim56Q80VI1 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Trim56Q80VI1 AC124569.2-201ENSMUST00000225998 818 ntBASIC19.32■□□□□ 0.68
Trim56Q80VI1 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim56Q80VI1 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Gm13312-201ENSMUST00000119631 718 ntBASIC19.31■□□□□ 0.68
Trim56Q80VI1 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Trim56Q80VI1 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms