Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Ddx55Q6ZPL9 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Gm26308-201ENSMUST00000157768 69 ntBASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Mir3113-201ENSMUST00000175478 76 ntBASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Ddx55Q6ZPL9 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Gm5648-201ENSMUST00000122244 1587 ntBASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Gm11764-201ENSMUST00000120221 623 ntBASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Mir6404-201ENSMUST00000183699 94 ntBASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Gm27646-201ENSMUST00000183989 110 ntBASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Mir8117-201ENSMUST00000184773 107 ntBASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Ddx55Q6ZPL9 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Gm6858-201ENSMUST00000208582 1468 ntBASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 H2af-ps-201ENSMUST00000119066 295 ntBASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Gm5682-201ENSMUST00000173402 505 ntBASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ddx55Q6ZPL9 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Rpl36-ps8-201ENSMUST00000121187 315 ntBASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 A430093F15Rik-205ENSMUST00000188480 509 ntTSL 3 BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Gm18622-201ENSMUST00000219361 595 ntBASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 AC132265.1-201ENSMUST00000219233 1665 ntBASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ddx55Q6ZPL9 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx55Q6ZPL9 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
Ddx55Q6ZPL9 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx55Q6ZPL9 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx55Q6ZPL9 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ddx55Q6ZPL9 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC18.58■□□□□ 0.56
Ddx55Q6ZPL9 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ddx55Q6ZPL9 Auts2-212ENSMUST00000178555 309 ntBASIC18.58■□□□□ 0.56
Ddx55Q6ZPL9 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC18.58■□□□□ 0.56
Ddx55Q6ZPL9 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC18.58■□□□□ 0.56
Ddx55Q6ZPL9 Bloc1s5-203ENSMUST00000224902 612 ntBASIC18.58■□□□□ 0.56
Ddx55Q6ZPL9 Ndufv3-202ENSMUST00000064798 485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ddx55Q6ZPL9 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms