Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Hmgb4Q6P8W9 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb4Q6P8W9 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
Hmgb4Q6P8W9 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC17.18■□□□□ 0.34
Hmgb4Q6P8W9 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Hmgb4Q6P8W9 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Gm34391-201ENSMUST00000203706 907 ntBASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Hmgb4Q6P8W9 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 AC124569.2-201ENSMUST00000225998 818 ntBASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Hmgb4Q6P8W9 Gm37166-201ENSMUST00000195473 2474 ntBASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Mzt1-203ENSMUST00000227948 952 ntBASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Hmgb4Q6P8W9 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
Hmgb4Q6P8W9 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Hmgb4Q6P8W9 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Hmgb4Q6P8W9 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Hmgb4Q6P8W9 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms