Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Gm8097-201ENSMUST00000117903 829 ntBASIC21.26■□□□□ 0.99
Trim28Q62318 Gm18733-201ENSMUST00000173950 856 ntBASIC21.26■□□□□ 0.99
Trim28Q62318 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC21.26■□□□□ 0.99
Trim28Q62318 Gm2651-201ENSMUST00000203560 838 ntBASIC21.26■□□□□ 0.99
Trim28Q62318 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Trim28Q62318 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
Trim28Q62318 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
Trim28Q62318 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Trim28Q62318 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim28Q62318 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC21.25■□□□□ 0.99
Trim28Q62318 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim28Q62318 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim28Q62318 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim28Q62318 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim28Q62318 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim28Q62318 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim28Q62318 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim28Q62318 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Trim28Q62318 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
Trim28Q62318 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Trim28Q62318 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim28Q62318 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC21.25■□□□□ 0.99
Trim28Q62318 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim28Q62318 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim28Q62318 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim28Q62318 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Trim28Q62318 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim28Q62318 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim28Q62318 Gm12350-201ENSMUST00000121208 462 ntBASIC21.24■□□□□ 0.99
Trim28Q62318 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC21.24■□□□□ 0.99
Trim28Q62318 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC21.24■□□□□ 0.99
Trim28Q62318 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim28Q62318 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim28Q62318 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim28Q62318 Gm5837-201ENSMUST00000191844 1369 ntBASIC21.23■□□□□ 0.99
Trim28Q62318 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC21.23■□□□□ 0.99
Trim28Q62318 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC21.23■□□□□ 0.99
Trim28Q62318 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC21.23■□□□□ 0.99
Trim28Q62318 Gm8655-201ENSMUST00000221159 852 ntBASIC21.23■□□□□ 0.99
Trim28Q62318 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Trim28Q62318 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Dapk1-207ENSMUST00000226059 5009 ntBASIC21.23■□□□□ 0.99
Trim28Q62318 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim28Q62318 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim28Q62318 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Trim28Q62318 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Trim28Q62318 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC21.22■□□□□ 0.99
Trim28Q62318 Mir5131-201ENSMUST00000175426 93 ntBASIC21.22■□□□□ 0.99
Trim28Q62318 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim28Q62318 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Trim28Q62318 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim28Q62318 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
Trim28Q62318 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Gm7230-201ENSMUST00000173026 815 ntBASIC21.21■□□□□ 0.99
Trim28Q62318 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC21.21■□□□□ 0.99
Trim28Q62318 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC21.21■□□□□ 0.99
Trim28Q62318 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Trim28Q62318 Gm8784-201ENSMUST00000222096 1435 ntBASIC21.21■□□□□ 0.99
Trim28Q62318 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Trim28Q62318 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim28Q62318 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 82.9 ms