Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 AC122351.1-201ENSMUST00000220467 126 ntBASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Trim58Q5NCC9 Dancr-204ENSMUST00000132389 2347 ntBASIC20.77■□□□□ 0.92
Trim58Q5NCC9 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 Dars-201ENSMUST00000027602 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Trim58Q5NCC9 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC20.77■□□□□ 0.91
Trim58Q5NCC9 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trim58Q5NCC9 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Trim58Q5NCC9 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Trim58Q5NCC9 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC20.77■□□□□ 0.91
Trim58Q5NCC9 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Trim58Q5NCC9 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC20.76■□□□□ 0.91
Trim58Q5NCC9 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Gm27389-201ENSMUST00000183622 195 ntBASIC20.76■□□□□ 0.91
Trim58Q5NCC9 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
Trim58Q5NCC9 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Gm22697-201ENSMUST00000175194 63 ntBASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Gm37722-201ENSMUST00000193757 208 ntBASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Gm18032-201ENSMUST00000222541 538 ntBASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Trim58Q5NCC9 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim58Q5NCC9 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC20.74■□□□□ 0.91
Trim58Q5NCC9 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC20.74■□□□□ 0.91
Trim58Q5NCC9 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Trim58Q5NCC9 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Trim58Q5NCC9 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 24.5 ms