Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 Gm5682-201ENSMUST00000173402 505 ntBASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 AC154757.1-201ENSMUST00000228289 336 ntBASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 AC117588.1-201ENSMUST00000228510 999 ntBASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ccdc88bQ4QRL3 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC26.6■■□□□ 1.85
Ccdc88bQ4QRL3 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC26.59■■□□□ 1.85
Ccdc88bQ4QRL3 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Gm27702-201ENSMUST00000184512 56 ntBASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 AC154222.1-201ENSMUST00000223882 475 ntBASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ccdc88bQ4QRL3 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC26.58■■□□□ 1.84
Ccdc88bQ4QRL3 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC26.58■■□□□ 1.84
Ccdc88bQ4QRL3 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Gm8000-201ENSMUST00000188378 592 ntBASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC26.57■■□□□ 1.84
Ccdc88bQ4QRL3 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 AC084391.1-201ENSMUST00000200651 141 ntBASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Gm8655-201ENSMUST00000221159 852 ntBASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Ccdc88bQ4QRL3 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Tsen15-205ENSMUST00000162371 431 ntTSL 5 BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Gm3928-201ENSMUST00000121141 1307 ntBASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC26.55■■□□□ 1.84
Ccdc88bQ4QRL3 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ccdc88bQ4QRL3 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ccdc88bQ4QRL3 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ccdc88bQ4QRL3 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ccdc88bQ4QRL3 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC26.54■■□□□ 1.84
Ccdc88bQ4QRL3 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
Ccdc88bQ4QRL3 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ccdc88bQ4QRL3 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ccdc88bQ4QRL3 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms