Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Upf3bQ3ULL6 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Gm6345-202ENSMUST00000180900 204 ntBASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Upf3bQ3ULL6 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Upf3bQ3ULL6 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Gm29518-201ENSMUST00000190858 372 ntBASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Upf3bQ3ULL6 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Upf3bQ3ULL6 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms