Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Gm11779-201ENSMUST00000118541 368 ntBASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Gm36967-201ENSMUST00000193814 266 ntBASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Psmb5-202ENSMUST00000227257 622 ntBASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Upf3aQ3ULJ3 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Gm4459-201ENSMUST00000118750 468 ntBASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Gm15173-201ENSMUST00000122049 433 ntBASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Upf3aQ3ULJ3 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Dock3-201ENSMUST00000044532 9063 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Gm8097-201ENSMUST00000117903 829 ntBASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Gm11594-201ENSMUST00000122313 162 ntBASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 4930445N18Rik-202ENSMUST00000181345 1033 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Ccnd3-208ENSMUST00000182539 931 ntTSL 2 BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Gm6089-201ENSMUST00000197666 938 ntBASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Upf3aQ3ULJ3 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Upf3aQ3ULJ3 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Upf3aQ3ULJ3 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
Upf3aQ3ULJ3 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Gm11780-201ENSMUST00000136880 516 ntBASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Gm5264-201ENSMUST00000190584 848 ntBASIC17.2■□□□□ 0.34
Upf3aQ3ULJ3 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms