Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Fam241b-208ENSMUST00000142796 1135 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Gm27300-201ENSMUST00000184085 97 ntBASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Gm27335-201ENSMUST00000184758 97 ntBASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Gm45167-201ENSMUST00000208007 322 ntBASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Skiv2l-ps1-201ENSMUST00000173935 658 ntBASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 AC159295.1-201ENSMUST00000225326 940 ntBASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
Ddb1Q3U1J4 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Gm13127-201ENSMUST00000118978 1389 ntBASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Dhdds-203ENSMUST00000105886 1015 ntTSL 5 BASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Tbc1d7-202ENSMUST00000179852 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Gm27321-201ENSMUST00000185021 205 ntBASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Ddb1Q3U1J4 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ddb1Q3U1J4 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Ddb1Q3U1J4 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Nkain4-202ENSMUST00000108873 865 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Ddb1Q3U1J4 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Gm2308-201ENSMUST00000166539 1004 ntBASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ddb1Q3U1J4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Gm4899-201ENSMUST00000178708 719 ntBASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ddb1Q3U1J4 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Pdlim5-212ENSMUST00000200043 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Gm13616-201ENSMUST00000120600 222 ntBASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC20.73■□□□□ 0.91
Ddb1Q3U1J4 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms