Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Camk2d-226ENSMUST00000199300 5524 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Wnt10b-204ENSMUST00000226655 1807 ntBASIC13.99□□□□□ -0.17
Col8a1Q00780 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col8a1Q00780 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col8a1Q00780 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col8a1Q00780 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Col8a1Q00780 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC13.98□□□□□ -0.17
Col8a1Q00780 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC13.98□□□□□ -0.17
Col8a1Q00780 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Col8a1Q00780 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col8a1Q00780 Nrxn1-216ENSMUST00000174331 6282 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
Col8a1Q00780 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Idnk-204ENSMUST00000226010 1898 ntBASIC13.97□□□□□ -0.17
Col8a1Q00780 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
Col8a1Q00780 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 AC151286.1-201ENSMUST00000198489 145 ntBASIC13.97□□□□□ -0.17
Col8a1Q00780 Gm43935-201ENSMUST00000203569 1050 ntBASIC13.97□□□□□ -0.17
Col8a1Q00780 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC13.97□□□□□ -0.17
Col8a1Q00780 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC13.97□□□□□ -0.17
Col8a1Q00780 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Col8a1Q00780 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Col8a1Q00780 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col8a1Q00780 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Col8a1Q00780 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Col8a1Q00780 Eda-203ENSMUST00000113776 5105 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
Col8a1Q00780 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Gm25990-201ENSMUST00000102440 86 ntBASIC13.96□□□□□ -0.17
Col8a1Q00780 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC13.96□□□□□ -0.17
Col8a1Q00780 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Gm8097-201ENSMUST00000117903 829 ntBASIC13.96□□□□□ -0.17
Col8a1Q00780 Gm14140-201ENSMUST00000119999 995 ntBASIC13.96□□□□□ -0.17
Col8a1Q00780 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Col8a1Q00780 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC13.96□□□□□ -0.18
Col8a1Q00780 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col8a1Q00780 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC13.96□□□□□ -0.18
Col8a1Q00780 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col8a1Q00780 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col8a1Q00780 Gm5648-201ENSMUST00000122244 1587 ntBASIC13.96□□□□□ -0.18
Col8a1Q00780 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col8a1Q00780 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Col8a1Q00780 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col8a1Q00780 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Col8a1Q00780 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Col8a1Q00780 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Col8a1Q00780 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC13.95□□□□□ -0.18
Col8a1Q00780 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC13.95□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms