Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC18.52■□□□□ 0.56
Col2a1P28481 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col2a1P28481 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col2a1P28481 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Col2a1P28481 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.52■□□□□ 0.56
Col2a1P28481 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col2a1P28481 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col2a1P28481 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Col2a1P28481 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Col2a1P28481 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col2a1P28481 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col2a1P28481 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.52■□□□□ 0.56
Col2a1P28481 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col2a1P28481 Gm4609-201ENSMUST00000106443 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm5138-201ENSMUST00000113842 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.55
Col2a1P28481 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col2a1P28481 Gm15191-201ENSMUST00000117933 1000 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm12182-201ENSMUST00000118655 1008 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm13882-201ENSMUST00000120886 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col2a1P28481 Gm10284-201ENSMUST00000145057 1005 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC18.52■□□□□ 0.55
Col2a1P28481 Gm6257-201ENSMUST00000163864 910 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col2a1P28481 Gm10481-201ENSMUST00000179228 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm2574-201ENSMUST00000181051 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm3200-201ENSMUST00000181493 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm8825-201ENSMUST00000182565 998 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm4518-201ENSMUST00000182638 718 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm8330-201ENSMUST00000182754 1008 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm4575-201ENSMUST00000182991 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm8709-201ENSMUST00000183230 1012 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
Col2a1P28481 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col2a1P28481 AC159106.1-201ENSMUST00000224421 690 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col2a1P28481 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col2a1P28481 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col2a1P28481 Gm10293-201ENSMUST00000076317 1002 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Gm6316-201ENSMUST00000082064 1020 ntBASIC18.52■□□□□ 0.55
Col2a1P28481 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col2a1P28481 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Col2a1P28481 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
Col2a1P28481 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC18.51■□□□□ 0.55
Col2a1P28481 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col2a1P28481 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col2a1P28481 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col2a1P28481 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC18.51■□□□□ 0.55
Col2a1P28481 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col2a1P28481 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col2a1P28481 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Col2a1P28481 Gm8344-201ENSMUST00000119813 856 ntBASIC18.51■□□□□ 0.55
Col2a1P28481 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC18.51■□□□□ 0.55
Col2a1P28481 Gm5682-201ENSMUST00000173402 505 ntBASIC18.51■□□□□ 0.55
Col2a1P28481 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Col2a1P28481 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
Col2a1P28481 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC18.51■□□□□ 0.55
Col2a1P28481 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC18.51■□□□□ 0.55
Col2a1P28481 Gm5364-201ENSMUST00000216789 889 ntBASIC18.51■□□□□ 0.55
Col2a1P28481 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Col2a1P28481 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col2a1P28481 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Col2a1P28481 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 AC115863.1-201ENSMUST00000214815 1813 ntBASIC18.5■□□□□ 0.55
Col2a1P28481 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.5■□□□□ 0.55
Col2a1P28481 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
Col2a1P28481 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.5■□□□□ 0.55
Col2a1P28481 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Gm11779-201ENSMUST00000118541 368 ntBASIC18.5■□□□□ 0.55
Col2a1P28481 Gm14140-201ENSMUST00000119999 995 ntBASIC18.5■□□□□ 0.55
Col2a1P28481 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.5■□□□□ 0.55
Col2a1P28481 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC18.5■□□□□ 0.55
Col2a1P28481 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC18.5■□□□□ 0.55
Col2a1P28481 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Sept8-207ENSMUST00000147912 1742 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Col2a1P28481 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col2a1P28481 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC18.49■□□□□ 0.55
Col2a1P28481 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Col2a1P28481 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC18.49■□□□□ 0.55
Col2a1P28481 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col2a1P28481 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col2a1P28481 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Col2a1P28481 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col2a1P28481 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Col2a1P28481 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms