Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC18.07■□□□□ 0.48
Msh3P13705 Gm13836-201ENSMUST00000121159 501 ntBASIC18.07■□□□□ 0.48
Msh3P13705 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Apopt1-204ENSMUST00000163220 671 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
Msh3P13705 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Msh3P13705 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.07■□□□□ 0.48
Msh3P13705 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Taf6l-206ENSMUST00000176610 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Msh3P13705 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
Msh3P13705 AC125350.1-201ENSMUST00000225115 903 ntBASIC18.06■□□□□ 0.48
Msh3P13705 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
Msh3P13705 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msh3P13705 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Msh3P13705 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Msh3P13705 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
Msh3P13705 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.05■□□□□ 0.48
Msh3P13705 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msh3P13705 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Msh3P13705 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Msh3P13705 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Gm23634-201ENSMUST00000175071 91 ntBASIC18.04■□□□□ 0.48
Msh3P13705 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
Msh3P13705 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Dmgdh-201ENSMUST00000048001 2992 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msh3P13705 Gm9889-202ENSMUST00000206983 1577 ntBASIC18.04■□□□□ 0.48
Msh3P13705 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC18.04■□□□□ 0.48
Msh3P13705 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC18.03■□□□□ 0.48
Msh3P13705 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Msh3P13705 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC18.03■□□□□ 0.48
Msh3P13705 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC18.03■□□□□ 0.48
Msh3P13705 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh3P13705 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh3P13705 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh3P13705 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Msh3P13705 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh3P13705 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Msh3P13705 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC18.02■□□□□ 0.48
Msh3P13705 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh3P13705 Gm11950-201ENSMUST00000121615 838 ntBASIC18.02■□□□□ 0.48
Msh3P13705 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Msh3P13705 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Msh3P13705 Gm10052-201ENSMUST00000168019 960 ntBASIC18.02■□□□□ 0.48
Msh3P13705 Gm29518-201ENSMUST00000190858 372 ntBASIC18.02■□□□□ 0.48
Msh3P13705 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms