Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Msx1P13297 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Msx1P13297 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Msx1P13297 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Msx1P13297 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Msx1P13297 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Msx1P13297 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Msx1P13297 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Msx1P13297 Gm7292-201ENSMUST00000194706 2527 ntBASIC15.53■□□□□ 0.08
Msx1P13297 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Msx1P13297 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Msx1P13297 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC15.53■□□□□ 0.08
Msx1P13297 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC15.53■□□□□ 0.08
Msx1P13297 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Msx1P13297 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Msx1P13297 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Msx1P13297 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Msx1P13297 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
Msx1P13297 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Msx1P13297 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Msx1P13297 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Msx1P13297 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Msx1P13297 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.52■□□□□ 0.08
Msx1P13297 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Msx1P13297 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Msx1P13297 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC15.52■□□□□ 0.08
Msx1P13297 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Msx1P13297 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC15.52■□□□□ 0.08
Msx1P13297 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
Msx1P13297 Gm15794-201ENSMUST00000120182 631 ntBASIC15.52■□□□□ 0.08
Msx1P13297 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Msx1P13297 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC15.52■□□□□ 0.08
Msx1P13297 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Msx1P13297 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC15.52■□□□□ 0.08
Msx1P13297 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Msx1P13297 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Msx1P13297 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Msx1P13297 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Msx1P13297 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Msx1P13297 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC15.52■□□□□ 0.07
Msx1P13297 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Msx1P13297 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
Msx1P13297 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
Msx1P13297 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Msx1P13297 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
Msx1P13297 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Gm18733-201ENSMUST00000173950 856 ntBASIC15.51■□□□□ 0.07
Msx1P13297 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Gm19087-201ENSMUST00000191430 946 ntBASIC15.51■□□□□ 0.07
Msx1P13297 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC15.51■□□□□ 0.07
Msx1P13297 AC124569.2-201ENSMUST00000225998 818 ntBASIC15.51■□□□□ 0.07
Msx1P13297 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Msx1P13297 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 AC154855.1-201ENSMUST00000227353 1458 ntBASIC15.51■□□□□ 0.07
Msx1P13297 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC15.51■□□□□ 0.07
Msx1P13297 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Msx1P13297 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
Msx1P13297 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC15.5■□□□□ 0.07
Msx1P13297 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Msx1P13297 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Gm12895-201ENSMUST00000122214 226 ntBASIC15.5■□□□□ 0.07
Msx1P13297 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC15.5■□□□□ 0.07
Msx1P13297 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC15.5■□□□□ 0.07
Msx1P13297 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Msx1P13297 Gm45244-201ENSMUST00000211328 2200 ntBASIC15.49■□□□□ 0.07
Msx1P13297 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC15.49■□□□□ 0.07
Msx1P13297 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 41.4 ms