Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC19.51■□□□□ 0.71
Col3a1P08121 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Col3a1P08121 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col3a1P08121 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col3a1P08121 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col3a1P08121 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col3a1P08121 Plpp7-202ENSMUST00000140762 634 ntTSL 3 BASIC19.5■□□□□ 0.71
Col3a1P08121 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Col3a1P08121 Gm6550-201ENSMUST00000187574 993 ntBASIC19.5■□□□□ 0.71
Col3a1P08121 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col3a1P08121 Gm8655-201ENSMUST00000221159 852 ntBASIC19.5■□□□□ 0.71
Col3a1P08121 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col3a1P08121 Gm8784-201ENSMUST00000222096 1435 ntBASIC19.5■□□□□ 0.71
Col3a1P08121 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col3a1P08121 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Col3a1P08121 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC19.49■□□□□ 0.71
Col3a1P08121 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Col3a1P08121 Gm15173-201ENSMUST00000122049 433 ntBASIC19.48■□□□□ 0.71
Col3a1P08121 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC19.48■□□□□ 0.71
Col3a1P08121 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC19.48■□□□□ 0.71
Col3a1P08121 AV026068-213ENSMUST00000223675 1171 ntBASIC19.48■□□□□ 0.71
Col3a1P08121 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
Col3a1P08121 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col3a1P08121 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col3a1P08121 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col3a1P08121 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Col3a1P08121 AC154527.4-201ENSMUST00000224364 1667 ntBASIC19.48■□□□□ 0.71
Col3a1P08121 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col3a1P08121 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col3a1P08121 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Col3a1P08121 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col3a1P08121 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Col3a1P08121 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col3a1P08121 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col3a1P08121 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col3a1P08121 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Col3a1P08121 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.47■□□□□ 0.71
Col3a1P08121 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col3a1P08121 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Col3a1P08121 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC19.47■□□□□ 0.71
Col3a1P08121 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC19.47■□□□□ 0.71
Col3a1P08121 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col3a1P08121 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Col3a1P08121 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC19.47■□□□□ 0.71
Col3a1P08121 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Col3a1P08121 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Col3a1P08121 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC19.46■□□□□ 0.71
Col3a1P08121 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Col3a1P08121 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Col3a1P08121 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Col3a1P08121 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
Col3a1P08121 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
Col3a1P08121 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Col3a1P08121 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col3a1P08121 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC19.45■□□□□ 0.7
Col3a1P08121 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col3a1P08121 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col3a1P08121 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.45■□□□□ 0.7
Col3a1P08121 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Col3a1P08121 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col3a1P08121 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Col3a1P08121 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col3a1P08121 AC084391.1-201ENSMUST00000200651 141 ntBASIC19.45■□□□□ 0.7
Col3a1P08121 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC19.45■□□□□ 0.7
Col3a1P08121 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms