Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC16.03■□□□□ 0.16
Chd3B1AR17 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC16.03■□□□□ 0.16
Chd3B1AR17 AC132265.1-201ENSMUST00000219233 1665 ntBASIC16.03■□□□□ 0.16
Chd3B1AR17 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
Chd3B1AR17 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.03■□□□□ 0.16
Chd3B1AR17 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Chd3B1AR17 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Chd3B1AR17 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC16.02■□□□□ 0.16
Chd3B1AR17 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Chd3B1AR17 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC16.02■□□□□ 0.15
Chd3B1AR17 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC16.02■□□□□ 0.15
Chd3B1AR17 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd3B1AR17 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Chd3B1AR17 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd3B1AR17 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd3B1AR17 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd3B1AR17 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd3B1AR17 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Chd3B1AR17 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Gm36967-201ENSMUST00000193814 266 ntBASIC16.01■□□□□ 0.15
Chd3B1AR17 AC108846.1-201ENSMUST00000214531 513 ntBASIC16.01■□□□□ 0.15
Chd3B1AR17 Il17b-201ENSMUST00000025471 692 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Gm2651-201ENSMUST00000203560 838 ntBASIC16.01■□□□□ 0.15
Chd3B1AR17 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Chd3B1AR17 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Chd3B1AR17 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Gm15165-201ENSMUST00000118140 502 ntBASIC16■□□□□ 0.15
Chd3B1AR17 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Chd3B1AR17 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Chd3B1AR17 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Chd3B1AR17 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC15.99■□□□□ 0.15
Chd3B1AR17 Ank1-201ENSMUST00000033947 1030 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC15.99■□□□□ 0.15
Chd3B1AR17 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Chd3B1AR17 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Chd3B1AR17 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms