Protein–RNA interactions for Protein: A2APX8

Scn1a, Sodium channel protein type 1 subunit alpha, mousemouse

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1aA2APX8 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn1aA2APX8 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn1aA2APX8 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn1aA2APX8 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn1aA2APX8 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Scn1aA2APX8 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Gm25406-201ENSMUST00000157599 105 ntBASIC17.16■□□□□ 0.34
Scn1aA2APX8 Gm17112-201ENSMUST00000163194 432 ntTSL 3 BASIC17.16■□□□□ 0.34
Scn1aA2APX8 AC108846.1-201ENSMUST00000214531 513 ntBASIC17.16■□□□□ 0.34
Scn1aA2APX8 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Scn1aA2APX8 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn1aA2APX8 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn1aA2APX8 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Scn1aA2APX8 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.34
Scn1aA2APX8 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Scn1aA2APX8 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.14■□□□□ 0.33
Scn1aA2APX8 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Scn1aA2APX8 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Shisa2-201ENSMUST00000053949 3119 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Gm7461-201ENSMUST00000058918 827 ntBASIC17.13■□□□□ 0.33
Scn1aA2APX8 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Gm14066-201ENSMUST00000134801 2057 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.13■□□□□ 0.33
Scn1aA2APX8 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.13■□□□□ 0.33
Scn1aA2APX8 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
Scn1aA2APX8 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Haglr-201ENSMUST00000100000 2085 ntBASIC17.12■□□□□ 0.33
Scn1aA2APX8 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.12■□□□□ 0.33
Scn1aA2APX8 AC133598.3-202ENSMUST00000224219 531 ntBASIC17.12■□□□□ 0.33
Scn1aA2APX8 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC17.12■□□□□ 0.33
Scn1aA2APX8 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Scn1aA2APX8 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 34.3 ms