Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC091564.1-201ENST00000464563 479 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 SNRPGP3-201ENST00000469405 227 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 RPL23AP44-201ENST00000482216 473 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC092902.1-201ENST00000486999 259 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC104619.4-201ENST00000510773 249 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC109471.1-201ENST00000511631 612 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 RNU2-58P-201ENST00000516403 183 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC007687.1-201ENST00000602704 304 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC010591.1-201ENST00000603941 649 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC006077.1-201ENST00000604746 343 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 BNIP3P19-201ENST00000605397 577 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AP000943.4-201ENST00000622912 357 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC098679.5-201ENST00000624394 571 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AL034408.1-202ENST00000636088 415 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 CEP170P1-201ENST00000502249 4587 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS35Q96QK1 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
VPS35Q96QK1 AC091152.2-201ENST00000591628 2569 ntBASIC3.56□□□□□ -1.84
VPS35Q96QK1 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS35Q96QK1 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS35Q96QK1 ZNF734P-201ENST00000419494 1534 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC117529.2-201ENST00000512159 2068 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS35Q96QK1 RNA5SP42-201ENST00000364278 115 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 MIR649-201ENST00000384843 97 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 EI24P1-201ENST00000416584 867 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 SFR1P2-201ENST00000421841 730 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 MRPS18BP2-201ENST00000434310 759 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 B3GNT2P1-201ENST00000434960 952 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 RPS7P2-201ENST00000435134 607 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AP000949.1-201ENST00000438328 629 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AL592437.1-201ENST00000443781 492 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC092451.1-201ENST00000480211 153 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC048346.1-201ENST00000510247 144 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 PHBP14-201ENST00000512887 367 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 HMGN1P15-201ENST00000513870 295 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 TBCA-206ENST00000518338 551 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 OR4A45P-201ENST00000529954 901 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 MEG8-215ENST00000555354 469 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC107954.1-201ENST00000565906 727 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 SNRPGP15-201ENST00000600149 222 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC113368.1-201ENST00000603736 382 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 RNVU1-4-201ENST00000612985 164 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 VN1R74P-201ENST00000613259 503 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 MIR8058-201ENST00000615737 89 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC068722.2-201ENST00000618734 544 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS35Q96QK1 OR6C71P-202ENST00000641886 1107 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS35Q96QK1 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS35Q96QK1 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS35Q96QK1 MFSD8-233ENST00000641482 4860 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AC092326.2-201ENST00000624772 1561 ntBASIC3.55□□□□□ -1.84
VPS35Q96QK1 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS35Q96QK1 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC138915.3-201ENST00000562908 1389 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS35Q96QK1 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 SNORA31-201ENST00000362607 130 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 RNU6-335P-201ENST00000364563 113 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 RNA5SP189-201ENST00000364920 115 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 MIR200C-201ENST00000384980 68 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 EIF5P1-201ENST00000400019 1231 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 OFD1P18Y-201ENST00000420889 959 ntBASIC3.54□□□□□ -1.84
VPS35Q96QK1 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS35Q96QK1 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms