Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TAS2R15P-201ENST00000390674 928 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 RPS3AP23-201ENST00000401762 784 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 ATP5A1P2-201ENST00000412323 255 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 YPEL5P1-201ENST00000419731 367 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 B3GALNT1P1-201ENST00000420569 975 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 TEX41-205ENST00000431734 529 ntTSL 4 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 RPL35AP28-201ENST00000459730 331 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC117522.3-201ENST00000507974 584 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC110792.2-201ENST00000510278 224 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 RNA5SP468-201ENST00000516782 93 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 RNA5SP471-201ENST00000516971 106 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 IGKV2-26-201ENST00000518305 343 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 IGLVIV-64-201ENST00000518581 301 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 CIR1P1-201ENST00000524055 1133 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AP000889.2-201ENST00000532684 490 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 RN7SL703P-201ENST00000578485 302 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 ZNF861P-201ENST00000588126 639 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC020914.6-201ENST00000594327 272 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC245036.5-201ENST00000596330 847 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 PRELID3BP8-201ENST00000604148 295 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 NUTF2P8-201ENST00000604593 363 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AC245389.1-201ENST00000605141 529 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 AL355816.1-201ENST00000607951 118 ntBASIC1.68□□□□□ -2.14
LINC00643Q86TS7 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 BANCR-201ENST00000624238 473 ntTSL 2 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
LINC00643Q86TS7 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 TANK-205ENST00000405852 2155 ntTSL 5 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 SNORA9.2-201ENST00000365361 133 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 MIR105-2-201ENST00000385083 81 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 SEPT7P2-202ENST00000398921 823 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 OR7E156P-201ENST00000400303 464 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 TANK-203ENST00000402568 878 ntTSL 5 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 RPL26P37-201ENST00000411983 438 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 OR8G2P-201ENST00000412796 908 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 TRIM60P3Y-201ENST00000432201 673 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AL121871.1-201ENST00000443413 436 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AL513328.1-201ENST00000446460 224 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 RPL23AP45-201ENST00000476406 468 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC108734.3-201ENST00000481241 1165 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC079804.2-201ENST00000490376 200 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC090255.1-201ENST00000495779 349 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC114322.1-201ENST00000506771 926 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC022690.1-201ENST00000526681 550 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC068831.4-201ENST00000556118 109 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 RPL23AP84-201ENST00000571193 464 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC008277.2-201ENST00000605196 797 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AL110115.1-201ENST00000614396 364 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC034102.8-201ENST00000615146 484 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AC007342.8-201ENST00000623278 678 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 CKAP2P1-201ENST00000555477 2049 ntBASIC1.67□□□□□ -2.14
LINC00643Q86TS7 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
LINC00643Q86TS7 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 ZNF720P1-201ENST00000562403 1939 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 CUL1P1-201ENST00000509510 2425 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 RN7SKP15-201ENST00000364742 309 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 RPL21P65-201ENST00000406094 466 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AL353692.2-201ENST00000407054 335 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.66□□□□□ -2.14
LINC00643Q86TS7 RNA5SP317-201ENST00000410176 116 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 RNA5SP311-201ENST00000411290 116 ntBASIC1.66□□□□□ -2.14
LINC00643Q86TS7 AC096533.1-201ENST00000411645 353 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms