Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 KATNBL1P1-201ENST00000605192 748 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 OR2AS2P-201ENST00000606902 342 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC093783.1-201ENST00000612976 329 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AL049777.1-201ENST00000622740 518 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.36□□□□□ -1.87
COL4A4P53420 AC139713.2-210ENST00000641741 992 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AL355578.1-201ENST00000607405 1328 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A4P53420 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A4P53420 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL4A4P53420 SNORA18.3-201ENST00000384122 132 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 RPS4XP8-201ENST00000402039 771 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 RNA5SP247-201ENST00000411181 105 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 AMD1P2-201ENST00000412936 992 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 LUZP4P1-201ENST00000415420 344 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 AL365338.1-201ENST00000422282 858 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 MORF4L1P7-201ENST00000426038 703 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 FTLP19-201ENST00000433300 394 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.36□□□□□ -1.87
COL4A4P53420 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 RNF2P1-201ENST00000442955 1010 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AL606517.1-201ENST00000446914 387 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 FDX1P2-201ENST00000450769 375 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 TVP23BP2-201ENST00000455082 615 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 RPS4XP22-201ENST00000480755 780 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC112184.1-201ENST00000505179 312 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC005351.1-201ENST00000511152 786 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
COL4A4P53420 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC3.36□□□□□ -1.87
COL4A4P53420 MTND3P12-201ENST00000559068 328 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AL109741.3-201ENST00000561748 592 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 MTATP6P24-201ENST00000576835 677 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 NF1P10-201ENST00000613227 742 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 AP003485.1-201ENST00000625093 753 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 MTND2P41-201ENST00000637599 773 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 MAPK6PS3-201ENST00000403865 2162 ntBASIC3.36□□□□□ -1.87
COL4A4P53420 OR5BR1P-201ENST00000524992 1330 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A4P53420 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.35□□□□□ -1.87
COL4A4P53420 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
COL4A4P53420 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A4P53420 AP003122.5-201ENST00000527668 3766 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.35□□□□□ -1.87
COL4A4P53420 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.35□□□□□ -1.87
COL4A4P53420 RNU1-75P-201ENST00000347264 129 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC3.35□□□□□ -1.87
COL4A4P53420 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.35□□□□□ -1.87
COL4A4P53420 RPL23AP22-201ENST00000437556 453 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.35□□□□□ -1.87
COL4A4P53420 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC3.35□□□□□ -1.87
COL4A4P53420 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC3.35□□□□□ -1.87
COL4A4P53420 AC025181.1-201ENST00000477507 416 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.35□□□□□ -1.87
COL4A4P53420 AL035404.1-201ENST00000497982 568 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 COX6CP8-201ENST00000522620 226 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 AC010306.1-201ENST00000523223 1117 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A4P53420 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
COL4A4P53420 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.35□□□□□ -1.87
COL4A4P53420 AC027449.1-201ENST00000608890 407 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 AC006386.1-201ENST00000619436 415 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 OR4G3P-201ENST00000633500 913 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
COL4A4P53420 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.35□□□□□ -1.87
COL4A4P53420 AL592494.2-201ENST00000425455 1548 ntBASIC3.35□□□□□ -1.87
COL4A4P53420 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.35□□□□□ -1.87
COL4A4P53420 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A4P53420 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A4P53420 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A4P53420 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A4P53420 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A4P53420 MTND4P13-201ENST00000402078 1023 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
COL4A4P53420 ZFAND6P1-201ENST00000434138 605 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 SLC31A1P1-201ENST00000451221 567 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 AC006539.3-201ENST00000454258 129 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A4P53420 AC004801.2-202ENST00000463559 283 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 AC104629.2-201ENST00000468627 598 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 RN7SL432P-201ENST00000484057 298 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC3.34□□□□□ -1.87
COL4A4P53420 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A4P53420 AC147055.1-201ENST00000509261 750 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 AC104027.1-201ENST00000521887 300 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 AP002404.1-201ENST00000532005 451 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 MTCYBP27-201ENST00000555160 670 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.34□□□□□ -1.87
COL4A4P53420 AC018552.3-201ENST00000567416 561 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.34□□□□□ -1.87
COL4A4P53420 AF129408.1-201ENST00000608767 431 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 AP005212.4-201ENST00000614206 710 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC3.34□□□□□ -1.87
COL4A4P53420 AC020633.1-201ENST00000468439 2247 ntBASIC3.34□□□□□ -1.87
COL4A4P53420 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.34□□□□□ -1.87
COL4A4P53420 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
COL4A4P53420 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms