Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 FABP5P12-201ENST00000515543 389 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AP002404.1-201ENST00000532005 451 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AC009097.3-201ENST00000563557 1018 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AC018552.3-201ENST00000567416 561 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 MIR622-201ENST00000638396 96 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 OR56A5-201ENST00000340110 738 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 RNU6-859P-201ENST00000362728 107 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 MIR1183-201ENST00000408856 89 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 MYL8P-204ENST00000431574 518 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 SNORA70.19-201ENST00000516717 90 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 SNORA31.21-201ENST00000517180 77 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 MIR5047-201ENST00000579212 100 ntBASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC88AQ3V6T2 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 RNA5SP502-201ENST00000362694 119 ntBASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 RNU2-52P-201ENST00000410680 190 ntBASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 HSD52-202ENST00000436225 772 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 AF186190.1-201ENST00000517470 480 ntBASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
CCDC88AQ3V6T2 MIR22-201ENST00000362190 85 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AP000936.3-201ENST00000438127 255 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 HMGN2P7-201ENST00000456186 273 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 OR9N1P-201ENST00000491296 333 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC114781.4-201ENST00000513707 639 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC234778.2-201ENST00000566241 354 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC008121.2-201ENST00000614647 523 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC107015.1-201ENST00000466902 747 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AP002884.2-201ENST00000471647 395 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 LDHBP3-201ENST00000514909 822 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC021733.2-201ENST00000518830 497 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AP001207.2-201ENST00000519490 539 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC011602.1-201ENST00000546484 331 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC024153.1-201ENST00000603103 365 ntBASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.75□□□□□ -1.81
CCDC88AQ3V6T2 AC096644.4-201ENST00000563417 2912 ntBASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 RPS20P32-201ENST00000456044 356 ntBASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 RPS17P11-201ENST00000474297 293 ntBASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 AC135999.1-201ENST00000478962 479 ntBASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 HIGD1AP13-201ENST00000509878 289 ntBASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 AC087241.4-201ENST00000612441 480 ntBASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
CCDC88AQ3V6T2 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AL445529.1-201ENST00000398713 389 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 RPS12P23-201ENST00000419579 400 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 AC087499.2-201ENST00000432861 149 ntBASIC3.73□□□□□ -1.81
CCDC88AQ3V6T2 TXNP1-201ENST00000441872 371 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms