Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cpsf3Q9QXK7 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Cpsf3Q9QXK7 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cpsf3Q9QXK7 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cpsf3Q9QXK7 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cpsf3Q9QXK7 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Cpsf3Q9QXK7 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Gm13216-201ENSMUST00000117145 591 ntBASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Gm27357-201ENSMUST00000183754 135 ntBASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 AC159205.3-201ENSMUST00000224614 874 ntBASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Cpsf3Q9QXK7 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Cpsf3Q9QXK7 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Gm10052-201ENSMUST00000168019 960 ntBASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Gm44430-201ENSMUST00000203376 995 ntBASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Gm7729-201ENSMUST00000050143 801 ntBASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Cpsf3Q9QXK7 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Gm17807-201ENSMUST00000186869 298 ntBASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cpsf3Q9QXK7 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Mir3081-201ENSMUST00000175305 84 ntBASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cpsf3Q9QXK7 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 52.6 ms