Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim54Q9ERP3 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim54Q9ERP3 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim54Q9ERP3 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
Trim54Q9ERP3 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Trim54Q9ERP3 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trim54Q9ERP3 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Gm13830-201ENSMUST00000124378 417 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 AC160338.1-201ENSMUST00000214232 705 ntBASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Trim54Q9ERP3 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Gm15165-201ENSMUST00000118140 502 ntBASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Gm44454-201ENSMUST00000198541 138 ntBASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Gm6443-201ENSMUST00000203599 874 ntBASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim54Q9ERP3 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim54Q9ERP3 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 36.5 ms