Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Ccdc28aQ8CEI3 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Wnt10b-204ENSMUST00000226655 1807 ntBASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Ccdc28aQ8CEI3 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Col11a2-201ENSMUST00000087497 6048 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Gm7712-202ENSMUST00000222331 1510 ntBASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Ccdc28aQ8CEI3 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 BC024978-204ENSMUST00000179391 1748 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Ube2j2-201ENSMUST00000024056 3483 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Ccdc28aQ8CEI3 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Gm10698-201ENSMUST00000182663 604 ntBASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Ccdc28aQ8CEI3 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms