Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC21.32■■□□□ 1
Trim28Q62318 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC21.32■■□□□ 1
Trim28Q62318 Gm9172-201ENSMUST00000212092 954 ntBASIC21.32■■□□□ 1
Trim28Q62318 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim28Q62318 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim28Q62318 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim28Q62318 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Trim28Q62318 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim28Q62318 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim28Q62318 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trim28Q62318 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim28Q62318 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Trim28Q62318 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Trim28Q62318 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim28Q62318 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim28Q62318 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim28Q62318 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trim28Q62318 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim28Q62318 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC21.31■■□□□ 1
Trim28Q62318 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Trim28Q62318 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim28Q62318 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim28Q62318 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim28Q62318 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC21.3■■□□□ 1
Trim28Q62318 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Trim28Q62318 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim28Q62318 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC21.3■■□□□ 1
Trim28Q62318 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim28Q62318 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim28Q62318 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC21.3■■□□□ 1
Trim28Q62318 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Gm18856-201ENSMUST00000178096 1374 ntBASIC21.29■■□□□ 1
Trim28Q62318 Gm25990-201ENSMUST00000102440 86 ntBASIC21.29■■□□□ 1
Trim28Q62318 Gm13418-201ENSMUST00000119097 944 ntBASIC21.29■■□□□ 1
Trim28Q62318 Gm11780-201ENSMUST00000136880 516 ntBASIC21.29■■□□□ 1
Trim28Q62318 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC21.29■■□□□ 1
Trim28Q62318 Gm4535-201ENSMUST00000182274 558 ntBASIC21.29■■□□□ 1
Trim28Q62318 Gm37584-201ENSMUST00000193595 1290 ntBASIC21.29■■□□□ 1
Trim28Q62318 AW822252-206ENSMUST00000208904 237 ntBASIC21.29■■□□□ 1
Trim28Q62318 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC21.29■■□□□ 1
Trim28Q62318 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC21.29■■□□□ 1
Trim28Q62318 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC21.29■■□□□ 1
Trim28Q62318 Gm10355-201ENSMUST00000097146 517 ntBASIC21.29■■□□□ 1
Trim28Q62318 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Trim28Q62318 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim28Q62318 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Trim28Q62318 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
Trim28Q62318 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
Trim28Q62318 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC21.28■■□□□ 1
Trim28Q62318 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC21.28■■□□□ 1
Trim28Q62318 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Izumo1r-201ENSMUST00000034409 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC21.28■■□□□ 1
Trim28Q62318 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Ddx41-204ENSMUST00000224765 2199 ntBASIC21.28■■□□□ 1
Trim28Q62318 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim28Q62318 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trim28Q62318 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trim28Q62318 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim28Q62318 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim28Q62318 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim28Q62318 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim28Q62318 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim28Q62318 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim28Q62318 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC21.27■■□□□ 1
Trim28Q62318 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC21.27■■□□□ 1
Trim28Q62318 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC21.27■■□□□ 1
Trim28Q62318 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Trim28Q62318 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
Trim28Q62318 Gm10060-201ENSMUST00000212002 111 ntBASIC21.27■■□□□ 1
Trim28Q62318 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim28Q62318 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Trim28Q62318 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim28Q62318 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Trim28Q62318 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
Trim28Q62318 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim28Q62318 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms