Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Gm14464-201ENSMUST00000119658 1254 ntBASIC20.24■□□□□ 0.83
Trim27Q62158 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trim27Q62158 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trim27Q62158 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trim27Q62158 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC20.23■□□□□ 0.83
Trim27Q62158 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Trim27Q62158 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Trim27Q62158 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Trim27Q62158 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC20.23■□□□□ 0.83
Trim27Q62158 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Trim27Q62158 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trim27Q62158 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.22■□□□□ 0.83
Trim27Q62158 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC20.22■□□□□ 0.83
Trim27Q62158 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Mir770-201ENSMUST00000103252 94 ntBASIC20.22■□□□□ 0.83
Trim27Q62158 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.22■□□□□ 0.83
Trim27Q62158 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Trim27Q62158 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trim27Q62158 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC20.22■□□□□ 0.83
Trim27Q62158 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC20.21■□□□□ 0.83
Trim27Q62158 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC20.21■□□□□ 0.83
Trim27Q62158 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Trim27Q62158 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Trim27Q62158 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Trim27Q62158 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Trim27Q62158 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC20.2■□□□□ 0.82
Trim27Q62158 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Gm6345-202ENSMUST00000180900 204 ntBASIC20.2■□□□□ 0.82
Trim27Q62158 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC20.2■□□□□ 0.82
Trim27Q62158 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC20.2■□□□□ 0.82
Trim27Q62158 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Trim27Q62158 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Trim27Q62158 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Trim27Q62158 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Trim27Q62158 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC20.19■□□□□ 0.82
Trim27Q62158 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Trim27Q62158 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC20.19■□□□□ 0.82
Trim27Q62158 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC20.19■□□□□ 0.82
Trim27Q62158 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Trim27Q62158 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms