Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
Trav6-3Q5R1E6 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Ttl-201ENSMUST00000035812 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Gm43353-201ENSMUST00000199224 1295 ntBASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Trav6-3Q5R1E6 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trav6-3Q5R1E6 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trav6-3Q5R1E6 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.3
Trav6-3Q5R1E6 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC13.21□□□□□ -0.3
Trav6-3Q5R1E6 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
Trav6-3Q5R1E6 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trav6-3Q5R1E6 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trav6-3Q5R1E6 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Trav6-3Q5R1E6 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Gm29257-201ENSMUST00000186115 639 ntBASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
Trav6-3Q5R1E6 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Mir5122-201ENSMUST00000175004 89 ntBASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Phf7-203ENSMUST00000226565 1971 ntBASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Zfp264-201ENSMUST00000208656 1563 ntBASIC13.19□□□□□ -0.3
Trav6-3Q5R1E6 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms