Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Usp28Q5I043 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp28Q5I043 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp28Q5I043 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.7■□□□□ 0.58
Usp28Q5I043 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Usp28Q5I043 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.7■□□□□ 0.58
Usp28Q5I043 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
Usp28Q5I043 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
Usp28Q5I043 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Usp28Q5I043 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.69■□□□□ 0.58
Usp28Q5I043 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC18.69■□□□□ 0.58
Usp28Q5I043 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Usp28Q5I043 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Usp28Q5I043 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
Usp28Q5I043 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Usp28Q5I043 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC18.68■□□□□ 0.58
Usp28Q5I043 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Usp28Q5I043 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Usp28Q5I043 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
Usp28Q5I043 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC18.68■□□□□ 0.58
Usp28Q5I043 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.68■□□□□ 0.58
Usp28Q5I043 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Usp28Q5I043 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Usp28Q5I043 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp28Q5I043 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp28Q5I043 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC18.67■□□□□ 0.58
Usp28Q5I043 Gm29994-201ENSMUST00000195495 1193 ntBASIC18.67■□□□□ 0.58
Usp28Q5I043 Gm30025-201ENSMUST00000218555 728 ntBASIC18.67■□□□□ 0.58
Usp28Q5I043 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
Usp28Q5I043 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Usp28Q5I043 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.67■□□□□ 0.58
Usp28Q5I043 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC18.66■□□□□ 0.58
Usp28Q5I043 Rabggta-203ENSMUST00000169237 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp28Q5I043 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Usp28Q5I043 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC18.66■□□□□ 0.58
Usp28Q5I043 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp28Q5I043 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.66■□□□□ 0.58
Usp28Q5I043 Gm13436-201ENSMUST00000120418 567 ntBASIC18.66■□□□□ 0.58
Usp28Q5I043 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.66■□□□□ 0.58
Usp28Q5I043 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp28Q5I043 Gm18421-201ENSMUST00000204122 625 ntBASIC18.66■□□□□ 0.58
Usp28Q5I043 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
Usp28Q5I043 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp28Q5I043 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms