Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Ndufa1-201ENSMUST00000016571 419 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 6030498E09Rik-201ENSMUST00000050744 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC20.85■□□□□ 0.93
Ddb1Q3U1J4 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Gm15743-202ENSMUST00000182690 1901 ntBASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC20.84■□□□□ 0.93
Ddb1Q3U1J4 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Mir6956-201ENSMUST00000183598 62 ntBASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Gm18622-201ENSMUST00000219361 595 ntBASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Gm37194-201ENSMUST00000193092 3031 ntBASIC20.83■□□□□ 0.93
Ddb1Q3U1J4 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ddb1Q3U1J4 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Ddb1Q3U1J4 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Ddb1Q3U1J4 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC20.83■□□□□ 0.92
Ddb1Q3U1J4 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.83■□□□□ 0.92
Ddb1Q3U1J4 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Gm37171-201ENSMUST00000192636 1185 ntBASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Ddb1Q3U1J4 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Htatip2-201ENSMUST00000085272 1418 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 AC124549.3-201ENSMUST00000225541 367 ntBASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
Ddb1Q3U1J4 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Gm36967-201ENSMUST00000193814 266 ntBASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 AC139382.1-201ENSMUST00000221402 498 ntBASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Ddb1Q3U1J4 Mef2b-203ENSMUST00000110143 1312 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Ddb1Q3U1J4 Stk33-203ENSMUST00000121378 1304 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 43 ms