Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Gm13418-201ENSMUST00000119097 944 ntBASIC20.81■□□□□ 0.92
Msh6P54276 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh6P54276 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Msh6P54276 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh6P54276 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC20.81■□□□□ 0.92
Msh6P54276 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh6P54276 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC20.81■□□□□ 0.92
Msh6P54276 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh6P54276 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh6P54276 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh6P54276 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Msh6P54276 Gm19439-201ENSMUST00000198195 2273 ntBASIC20.8■□□□□ 0.92
Msh6P54276 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh6P54276 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh6P54276 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
Msh6P54276 Gm25745-201ENSMUST00000174945 133 ntBASIC20.8■□□□□ 0.92
Msh6P54276 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC20.8■□□□□ 0.92
Msh6P54276 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh6P54276 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh6P54276 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Msh6P54276 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Msh6P54276 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
Msh6P54276 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Msh6P54276 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC20.79■□□□□ 0.92
Msh6P54276 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC20.79■□□□□ 0.92
Msh6P54276 AC127349.1-201ENSMUST00000224590 266 ntBASIC20.79■□□□□ 0.92
Msh6P54276 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC20.79■□□□□ 0.92
Msh6P54276 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Msh6P54276 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC20.79■□□□□ 0.92
Msh6P54276 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Msh6P54276 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC20.78■□□□□ 0.92
Msh6P54276 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC20.78■□□□□ 0.92
Msh6P54276 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
Msh6P54276 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC20.78■□□□□ 0.92
Msh6P54276 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC20.78■□□□□ 0.92
Msh6P54276 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Msh6P54276 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh6P54276 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC20.77■□□□□ 0.92
Msh6P54276 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC20.77■□□□□ 0.92
Msh6P54276 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh6P54276 CT943659.1-201ENSMUST00000215459 326 ntBASIC20.77■□□□□ 0.92
Msh6P54276 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh6P54276 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Msh6P54276 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC20.77■□□□□ 0.92
Msh6P54276 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Msh6P54276 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh6P54276 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh6P54276 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Msh6P54276 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Msh6P54276 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Msh6P54276 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Gm4995-201ENSMUST00000117247 432 ntBASIC20.76■□□□□ 0.91
Msh6P54276 Gm43575-201ENSMUST00000196420 516 ntBASIC20.76■□□□□ 0.91
Msh6P54276 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Msh6P54276 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Msh6P54276 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Msh6P54276 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh6P54276 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Msh6P54276 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh6P54276 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Msh6P54276 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC20.75■□□□□ 0.91
Msh6P54276 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC20.75■□□□□ 0.91
Msh6P54276 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC20.75■□□□□ 0.91
Msh6P54276 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC20.75■□□□□ 0.91
Msh6P54276 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC20.75■□□□□ 0.91
Msh6P54276 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC20.75■□□□□ 0.91
Msh6P54276 Gm7506-201ENSMUST00000207758 815 ntBASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms