Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Msh3P13705 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Msh3P13705 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
Msh3P13705 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC18.12■□□□□ 0.49
Msh3P13705 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Gm42918-201ENSMUST00000199249 1580 ntBASIC18.12■□□□□ 0.49
Msh3P13705 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Msh3P13705 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC18.11■□□□□ 0.49
Msh3P13705 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Msh3P13705 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.11■□□□□ 0.49
Msh3P13705 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Msh3P13705 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Msh3P13705 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Msh3P13705 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Msh3P13705 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.1■□□□□ 0.49
Msh3P13705 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
Msh3P13705 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Msh3P13705 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
Msh3P13705 Gm6659-201ENSMUST00000174752 547 ntBASIC18.1■□□□□ 0.49
Msh3P13705 Gm6345-202ENSMUST00000180900 204 ntBASIC18.1■□□□□ 0.49
Msh3P13705 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC18.1■□□□□ 0.49
Msh3P13705 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Msh3P13705 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msh3P13705 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
Msh3P13705 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msh3P13705 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msh3P13705 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msh3P13705 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Msh3P13705 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msh3P13705 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msh3P13705 Mir7071-201ENSMUST00000184847 69 ntBASIC18.09■□□□□ 0.49
Msh3P13705 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Msh3P13705 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Msh3P13705 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Msh3P13705 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Msh3P13705 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Msh3P13705 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.08■□□□□ 0.49
Msh3P13705 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Msh3P13705 Gm8258-201ENSMUST00000055593 1449 ntBASIC18.08■□□□□ 0.49
Msh3P13705 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Msh3P13705 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC18.08■□□□□ 0.49
Msh3P13705 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Msh3P13705 Ttc39b-202ENSMUST00000048274 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Msh3P13705 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Msh3P13705 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Gm44430-201ENSMUST00000203376 995 ntBASIC18.08■□□□□ 0.48
Msh3P13705 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Msh3P13705 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msh3P13705 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msh3P13705 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 54.9 ms