Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC19.2■□□□□ 0.66
Col1a1P11087 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Gstt2-201ENSMUST00000038257 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col1a1P11087 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC19.2■□□□□ 0.66
Col1a1P11087 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Col1a1P11087 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Col1a1P11087 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC19.19■□□□□ 0.66
Col1a1P11087 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC19.19■□□□□ 0.66
Col1a1P11087 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Col1a1P11087 Miox-201ENSMUST00000023282 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Gm15500-202ENSMUST00000071641 1019 ntBASIC19.19■□□□□ 0.66
Col1a1P11087 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC19.19■□□□□ 0.66
Col1a1P11087 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col1a1P11087 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col1a1P11087 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC19.17■□□□□ 0.66
Col1a1P11087 Gm6858-201ENSMUST00000208582 1468 ntBASIC19.17■□□□□ 0.66
Col1a1P11087 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC19.17■□□□□ 0.66
Col1a1P11087 Gm44945-201ENSMUST00000206764 1187 ntBASIC19.17■□□□□ 0.66
Col1a1P11087 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.17■□□□□ 0.66
Col1a1P11087 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Col1a1P11087 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Gm45188-201ENSMUST00000207592 1369 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC19.16■□□□□ 0.66
Col1a1P11087 Chchd6-202ENSMUST00000113550 1042 ntTSL 5 BASIC19.16■□□□□ 0.66
Col1a1P11087 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Timm9-205ENSMUST00000221178 529 ntTSL 3 BASIC19.16■□□□□ 0.66
Col1a1P11087 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
Col1a1P11087 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col1a1P11087 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC19.16■□□□□ 0.66
Col1a1P11087 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Col1a1P11087 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Col1a1P11087 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC19.16■□□□□ 0.66
Col1a1P11087 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
Col1a1P11087 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
Col1a1P11087 Gm7229-201ENSMUST00000214719 1007 ntBASIC19.16■□□□□ 0.66
Col1a1P11087 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Col1a1P11087 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC19.15■□□□□ 0.66
Col1a1P11087 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC19.15■□□□□ 0.66
Col1a1P11087 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
Col1a1P11087 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC19.14■□□□□ 0.66
Col1a1P11087 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col1a1P11087 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Col1a1P11087 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col1a1P11087 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Col1a1P11087 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Col1a1P11087 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms