Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Chmp6P0C0A3 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Chmp6P0C0A3 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Chmp6P0C0A3 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Gm6659-201ENSMUST00000174752 547 ntBASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Chmp6P0C0A3 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 AL590614.2-201ENSMUST00000225374 1937 ntBASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Gm23634-201ENSMUST00000175071 91 ntBASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Chmp6P0C0A3 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Chmp6P0C0A3 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms