Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC13.7□□□□□ -0.22
Hmgb3O54879 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
Hmgb3O54879 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Hmgb3O54879 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hmgb3O54879 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 AC154231.1-201ENSMUST00000220564 2175 ntBASIC13.69□□□□□ -0.22
Hmgb3O54879 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Hmgb3O54879 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
Hmgb3O54879 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hmgb3O54879 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Zfp783-201ENSMUST00000095946 670 ntBASIC13.69□□□□□ -0.22
Hmgb3O54879 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hmgb3O54879 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hmgb3O54879 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Hmgb3O54879 Zfp740-202ENSMUST00000119168 3932 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hmgb3O54879 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC13.68□□□□□ -0.22
Hmgb3O54879 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Dsp-202ENSMUST00000127906 7761 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Hmgb3O54879 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
Hmgb3O54879 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Llgl1-201ENSMUST00000052346 4303 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Suco-201ENSMUST00000048377 6327 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hmgb3O54879 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Hmgb3O54879 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Nrxn1-202ENSMUST00000072671 8118 ntTSL 5 BASIC13.67□□□□□ -0.22
Hmgb3O54879 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Hmgb3O54879 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Cops7b-202ENSMUST00000121534 5383 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Hmgb3O54879 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Hmgb3O54879 Mir2861-201ENSMUST00000175539 82 ntBASIC13.67□□□□□ -0.22
Hmgb3O54879 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms