Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC4.49□□□□□ -1.69
PTPN9P43378 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.49□□□□□ -1.69
PTPN9P43378 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.49□□□□□ -1.69
PTPN9P43378 AC055839.1-201ENST00000634467 498 ntBASIC4.49□□□□□ -1.69
PTPN9P43378 AC103706.2-201ENST00000638080 240 ntBASIC4.49□□□□□ -1.69
PTPN9P43378 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.49□□□□□ -1.69
PTPN9P43378 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
PTPN9P43378 AC012020.1-201ENST00000624541 1728 ntBASIC4.49□□□□□ -1.69
PTPN9P43378 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
PTPN9P43378 AC007529.1-201ENST00000418574 2178 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.48□□□□□ -1.69
PTPN9P43378 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.48□□□□□ -1.69
PTPN9P43378 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTPN9P43378 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTPN9P43378 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PTPN9P43378 RNU1-108P-201ENST00000362556 161 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 RNA5SP502-201ENST00000362694 119 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 RNU6-251P-201ENST00000363235 104 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 RNU6-984P-201ENST00000363236 109 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 Y_RNA.311-201ENST00000365068 96 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 RNU6-444P-201ENST00000383988 108 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 FABP12P1-201ENST00000401911 322 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PTPN9P43378 MTCO3P31-201ENST00000405526 789 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.48□□□□□ -1.69
PTPN9P43378 FCF1P2-201ENST00000415284 583 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 RPS23P10-201ENST00000416185 486 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 BOLA3P4-201ENST00000418151 400 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.48□□□□□ -1.69
PTPN9P43378 AC009237.2-201ENST00000421358 284 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.48□□□□□ -1.69
PTPN9P43378 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.48□□□□□ -1.69
PTPN9P43378 MTND4P20-201ENST00000424125 869 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 DNAJC19P7-201ENST00000428811 344 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 TXNL1P1-201ENST00000429528 554 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.48□□□□□ -1.69
PTPN9P43378 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.48□□□□□ -1.69
PTPN9P43378 RPL23AP81-201ENST00000455252 467 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC4.48□□□□□ -1.69
PTPN9P43378 RN7SL459P-201ENST00000481078 302 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 RPL30P11-201ENST00000495304 339 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC108145.1-201ENST00000503770 153 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 BNIP3P41-201ENST00000503774 571 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AL592156.1-201ENST00000508758 304 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC105313.1-201ENST00000509121 353 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 VWA8P1-201ENST00000510889 176 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC4.48□□□□□ -1.69
PTPN9P43378 AC010486.3-201ENST00000511602 785 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.48□□□□□ -1.69
PTPN9P43378 MTCO1P30-201ENST00000515244 580 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.48□□□□□ -1.69
PTPN9P43378 RNU6-1261P-201ENST00000517194 104 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.48□□□□□ -1.69
PTPN9P43378 AC074029.1-201ENST00000552531 1044 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 MTND6P33-201ENST00000571794 183 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AL121834.1-201ENST00000572284 509 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC4.48□□□□□ -1.69
PTPN9P43378 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.48□□□□□ -1.69
PTPN9P43378 AL133507.1-201ENST00000605269 557 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AL158042.1-201ENST00000605338 460 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.48□□□□□ -1.69
PTPN9P43378 AL136295.6-201ENST00000610486 658 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
PTPN9P43378 AL603755.1-201ENST00000619504 163 ntBASIC4.48□□□□□ -1.69
PTPN9P43378 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.48□□□□□ -1.69
PTPN9P43378 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTPN9P43378 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC4.48□□□□□ -1.69
PTPN9P43378 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.48□□□□□ -1.69
PTPN9P43378 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
PTPN9P43378 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PTPN9P43378 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.47□□□□□ -1.69
PTPN9P43378 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.47□□□□□ -1.69
PTPN9P43378 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.47□□□□□ -1.69
PTPN9P43378 AC114546.3-201ENST00000623582 1734 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PTPN9P43378 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.47□□□□□ -1.69
PTPN9P43378 AC107081.3-201ENST00000612715 2034 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PTPN9P43378 RNU4-40P-201ENST00000364351 143 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 RNA5SP509-201ENST00000364577 119 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
PTPN9P43378 MIR506-201ENST00000384998 124 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 U3.22-201ENST00000391120 215 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.47□□□□□ -1.69
PTPN9P43378 RNU6-757P-201ENST00000410334 100 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AC092634.6-201ENST00000418558 192 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC4.47□□□□□ -1.69
PTPN9P43378 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AC010881.1-201ENST00000433830 235 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 RPS20P1-201ENST00000434853 354 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC4.47□□□□□ -1.69
PTPN9P43378 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.47□□□□□ -1.69
PTPN9P43378 AL162388.1-201ENST00000450912 352 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.47□□□□□ -1.69
PTPN9P43378 AC010683.1-201ENST00000473673 378 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 AP000893.1-201ENST00000474462 794 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.47□□□□□ -1.69
PTPN9P43378 RPL35P6-201ENST00000490024 372 ntBASIC4.47□□□□□ -1.69
PTPN9P43378 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms