Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC099336.2-201ENST00000422457 254 ntBASIC4.99□□□□□ -1.61
MSX2P35548 RPL34P6-201ENST00000432390 345 ntBASIC4.99□□□□□ -1.61
MSX2P35548 RPL37P21-201ENST00000435890 276 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AL031663.1-201ENST00000437445 219 ntBASIC4.99□□□□□ -1.61
MSX2P35548 PGBD4P3-201ENST00000440731 581 ntBASIC4.99□□□□□ -1.61
MSX2P35548 RPS7P5-201ENST00000441482 581 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 RPL7AP61-201ENST00000443410 636 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX2P35548 BTF3P6-201ENST00000448054 499 ntBASIC4.99□□□□□ -1.61
MSX2P35548 PPIAP20-201ENST00000449839 135 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AL591623.2-201ENST00000449978 222 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AC099560.2-201ENST00000457554 255 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AC068228.1-201ENST00000461723 211 ntBASIC4.99□□□□□ -1.61
MSX2P35548 OR52A4P-201ENST00000472867 958 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AC090638.1-201ENST00000498296 909 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX2P35548 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX2P35548 AC009646.1-201ENST00000510455 318 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX2P35548 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX2P35548 AP001893.2-201ENST00000526949 202 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX2P35548 AP000648.1-201ENST00000529682 397 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 CENPUP2-201ENST00000555897 1186 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AC011840.5-201ENST00000582125 771 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX2P35548 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC4.99□□□□□ -1.61
MSX2P35548 PSMA6P4-201ENST00000603247 718 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AC008277.2-201ENST00000605196 797 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AC126177.8-201ENST00000618339 1015 ntBASIC4.99□□□□□ -1.61
MSX2P35548 BX005214.3-202ENST00000619809 325 ntBASIC4.99□□□□□ -1.61
MSX2P35548 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX2P35548 AP001005.3-201ENST00000622049 129 ntBASIC4.99□□□□□ -1.61
MSX2P35548 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 ALB-209ENST00000503124 1741 ntTSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
MSX2P35548 ZNF680P1-201ENST00000436625 1469 ntBASIC4.99□□□□□ -1.61
MSX2P35548 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.99□□□□□ -1.61
MSX2P35548 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.99□□□□□ -1.61
MSX2P35548 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX2P35548 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 RARSP1-201ENST00000542842 1418 ntBASIC4.98□□□□□ -1.61
MSX2P35548 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 AC117529.2-201ENST00000512159 2068 ntBASIC4.98□□□□□ -1.61
MSX2P35548 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.98□□□□□ -1.61
MSX2P35548 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
MSX2P35548 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 Y_RNA.25-201ENST00000362528 102 ntBASIC4.98□□□□□ -1.61
MSX2P35548 RN7SKP153-201ENST00000365026 316 ntBASIC4.98□□□□□ -1.61
MSX2P35548 RNA5SP223-201ENST00000365174 120 ntBASIC4.98□□□□□ -1.61
MSX2P35548 RNU6-116P-201ENST00000384042 109 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AL078599.1-201ENST00000402075 293 ntBASIC4.98□□□□□ -1.61
MSX2P35548 U3.32-201ENST00000408116 212 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AL139128.1-201ENST00000413921 941 ntBASIC4.98□□□□□ -1.61
MSX2P35548 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 TMBIM7P-201ENST00000418074 855 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC092634.6-201ENST00000418558 192 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSX2P35548 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.98□□□□□ -1.61
MSX2P35548 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 AL451074.3-201ENST00000437709 472 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.98□□□□□ -1.61
MSX2P35548 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 RN7SL809P-201ENST00000482040 297 ntBASIC4.98□□□□□ -1.61
MSX2P35548 MTCYBP17-201ENST00000503579 789 ntBASIC4.98□□□□□ -1.61
MSX2P35548 MTCO2P30-201ENST00000503662 364 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC114981.1-201ENST00000503897 678 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 MTND3P22-201ENST00000510932 243 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.98□□□□□ -1.61
MSX2P35548 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 RNA5SP216-201ENST00000516111 123 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC027309.2-201ENST00000520566 192 ntBASIC4.98□□□□□ -1.61
MSX2P35548 OR5AP1P-201ENST00000529730 940 ntBASIC4.98□□□□□ -1.61
MSX2P35548 OR5AL2P-201ENST00000532185 920 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX2P35548 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX2P35548 HMGB1P33-201ENST00000563485 527 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC141257.3-201ENST00000572906 215 ntBASIC4.98□□□□□ -1.61
MSX2P35548 AC137800.2-201ENST00000574375 120 ntBASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms