Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.65□□□□□ -1.83
SHOX2O60902 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SHOX2O60902 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.64□□□□□ -1.83
SHOX2O60902 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
SHOX2O60902 AC007656.2-201ENST00000624902 4547 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 OR5M3-201ENST00000312240 1051 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SHOX2O60902 SOD2P1-201ENST00000396543 562 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 ST13P16-201ENST00000401760 781 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 RPS27AP11-201ENST00000402798 447 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 RN7SKP177-201ENST00000410567 355 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 CRYBB2P1-203ENST00000415709 538 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC3.64□□□□□ -1.83
SHOX2O60902 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.64□□□□□ -1.83
SHOX2O60902 MTCO1P45-201ENST00000431457 267 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 FTH1P1-201ENST00000437933 532 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 AC009969.1-201ENST00000438726 172 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC3.64□□□□□ -1.83
SHOX2O60902 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.64□□□□□ -1.83
SHOX2O60902 HMGN2P7-201ENST00000456186 273 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 AC105137.1-201ENST00000484355 562 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 AP000563.1-201ENST00000490865 758 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 KCTD9P5-201ENST00000504141 1170 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 AC245166.1-201ENST00000521012 253 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.64□□□□□ -1.83
SHOX2O60902 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SHOX2O60902 MIR4458-201ENST00000578872 75 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.64□□□□□ -1.83
SHOX2O60902 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.64□□□□□ -1.83
SHOX2O60902 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SHOX2O60902 AL713922.2-201ENST00000619384 716 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 MIR3653-201ENST00000625572 110 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 CCT8P1-201ENST00000413611 1657 ntBASIC3.64□□□□□ -1.83
SHOX2O60902 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SHOX2O60902 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
SHOX2O60902 AC005261.4-201ENST00000600047 1385 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
SHOX2O60902 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
SHOX2O60902 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
SHOX2O60902 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SHOX2O60902 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
SHOX2O60902 RNU6-666P-201ENST00000363499 107 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
SHOX2O60902 AL592293.2-201ENST00000422292 996 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 AC023141.6-201ENST00000429418 337 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 MRPS18BP2-201ENST00000434310 759 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 ARL5AP3-201ENST00000439327 386 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 UQCRHP4-201ENST00000471686 272 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC3.63□□□□□ -1.83
SHOX2O60902 RPS27AP13-201ENST00000498403 237 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 AC108078.3-201ENST00000502633 489 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 POU5F1P7-201ENST00000508759 541 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.63□□□□□ -1.83
SHOX2O60902 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 AL121766.1-201ENST00000547436 487 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 DUXAP6-201ENST00000553858 601 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.63□□□□□ -1.83
SHOX2O60902 AP005901.4-201ENST00000577336 569 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 RN7SL600P-201ENST00000581811 299 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 AC008739.3-201ENST00000603262 127 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 AC083899.3-201ENST00000603413 594 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 AL732618.1-201ENST00000623251 301 ntBASIC3.63□□□□□ -1.83
SHOX2O60902 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC3.63□□□□□ -1.83
SHOX2O60902 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHOX2O60902 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SHOX2O60902 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.62□□□□□ -1.83
SHOX2O60902 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHOX2O60902 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.62□□□□□ -1.83
SHOX2O60902 U3.11-201ENST00000364476 212 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 SNORA62.3-201ENST00000365110 153 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 RN7SKP33-201ENST00000410942 340 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 RNA5SP498-201ENST00000411342 120 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC3.62□□□□□ -1.83
SHOX2O60902 MTND4P22-201ENST00000413116 1169 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.62□□□□□ -1.83
SHOX2O60902 Z97055.1-201ENST00000419730 712 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.62□□□□□ -1.83
SHOX2O60902 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.62□□□□□ -1.83
SHOX2O60902 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
SHOX2O60902 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.62□□□□□ -1.83
SHOX2O60902 RPL23AP82-202ENST00000427528 469 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.62□□□□□ -1.83
SHOX2O60902 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.62□□□□□ -1.83
SHOX2O60902 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC3.62□□□□□ -1.83
SHOX2O60902 AL357552.1-201ENST00000445254 415 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC3.62□□□□□ -1.83
SHOX2O60902 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.62□□□□□ -1.83
SHOX2O60902 CENPBD1P1-201ENST00000464061 469 ntBASIC3.62□□□□□ -1.83
SHOX2O60902 RPL23AP12-201ENST00000467573 473 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms