Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Prpf40aQ9R1C7 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Prpf40aQ9R1C7 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Prpf40aQ9R1C7 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Prpf40aQ9R1C7 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Gm10231-201ENSMUST00000181584 441 ntBASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Gm10175-202ENSMUST00000208752 441 ntBASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Prpf40aQ9R1C7 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Gm13836-201ENSMUST00000121159 501 ntBASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 AC121577.1-201ENSMUST00000227302 707 ntBASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Prpf40aQ9R1C7 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Hivep3-201ENSMUST00000084306 2973 ntBASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Actl10-202ENSMUST00000226583 1501 ntBASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.12■□□□□ 0.49
Prpf40aQ9R1C7 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Gm18101-201ENSMUST00000215769 548 ntBASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Prpf40aQ9R1C7 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms