Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim54Q9ERP3 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim54Q9ERP3 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim54Q9ERP3 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim54Q9ERP3 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Rprl3-201ENSMUST00000157400 290 ntBASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim54Q9ERP3 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Cmtm5-203ENSMUST00000227441 610 ntBASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim54Q9ERP3 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Gm27867-201ENSMUST00000184778 125 ntBASIC17.8■□□□□ 0.44
Trim54Q9ERP3 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Gm44430-201ENSMUST00000203376 995 ntBASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Lmo1-203ENSMUST00000208136 772 ntTSL 2 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim54Q9ERP3 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim54Q9ERP3 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
Trim54Q9ERP3 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms