Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Cpsf1Q9EPU4 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 AC115863.1-201ENSMUST00000214815 1813 ntBASIC22.67■■□□□ 1.22
Cpsf1Q9EPU4 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Gm6296-201ENSMUST00000222599 943 ntBASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC22.66■■□□□ 1.22
Cpsf1Q9EPU4 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Gm12497-201ENSMUST00000138778 237 ntBASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Gm25745-201ENSMUST00000174945 133 ntBASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 AC160338.1-201ENSMUST00000214232 705 ntBASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Cpsf1Q9EPU4 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cpsf1Q9EPU4 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC22.64■■□□□ 1.22
Cpsf1Q9EPU4 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Cpsf1Q9EPU4 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
Cpsf1Q9EPU4 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
Cpsf1Q9EPU4 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
Cpsf1Q9EPU4 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
Cpsf1Q9EPU4 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cpsf1Q9EPU4 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC22.64■■□□□ 1.21
Cpsf1Q9EPU4 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC22.64■■□□□ 1.21
Cpsf1Q9EPU4 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cpsf1Q9EPU4 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cpsf1Q9EPU4 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Cpsf1Q9EPU4 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Gm43514-201ENSMUST00000198852 424 ntBASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Cpsf1Q9EPU4 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Gm45774-201ENSMUST00000211992 2665 ntBASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Gm9172-201ENSMUST00000212092 954 ntBASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Cpsf1Q9EPU4 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Retrieved 100 of 76,532 protein–RNA pairs in 12.2 ms