Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Gm37166-201ENSMUST00000195473 2474 ntBASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Ddx56Q9D0R4 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gm18101-201ENSMUST00000215769 548 ntBASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 AC122351.1-201ENSMUST00000220467 126 ntBASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gm21559-201ENSMUST00000220638 855 ntBASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gm8587-201ENSMUST00000076538 843 ntBASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Ddx56Q9D0R4 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Ddx56Q9D0R4 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
Ddx56Q9D0R4 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx56Q9D0R4 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
Ddx56Q9D0R4 Gm29707-201ENSMUST00000196325 491 ntBASIC17.33■□□□□ 0.36
Ddx56Q9D0R4 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx56Q9D0R4 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx56Q9D0R4 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
Ddx56Q9D0R4 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Ddx56Q9D0R4 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Ddx56Q9D0R4 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Gm18032-201ENSMUST00000222541 538 ntBASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Ddx56Q9D0R4 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms